SCIAMA

High Performance Compute Cluster

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  • Home
  • Getting Started
    • How to get an account
    • How to Log in
    • Log in from Windows
    • Using X2Go
    • Create an SSH key pair
    • SSH Fingerprints
    • Using SSH keys
    • Training Exercises
    • Slurm MPI Batch Script
  • Using SCIAMA
    • Using Jupyter Notebooks
    • Using JupyterHub
    • Using Spyder
    • Storage Policy
    • Submitting jobs
    • Using GPUs
    • Using Matlab
    • Using Conda Environments
    • SLURM for PBS Users
    • File transfers
    • GitHub/BitBucket
    • Cloud Backup
    • Reserving Compute Nodes
    • Acknowledging SCIAMA
  • Resources
    • Hardware
    • Queues
    • Software
      • Using Software Modules
      • Changing Default Modules
      • Mixing MPI and OpenMP
      • Using CONDA
  • System Status
    • Core Usage
    • Disk Usage
    • Users Logged In
    • Jobs Status
    • Jobs by Group
    • Node Status
    • SCIAMA Grafana Dashboard
    • Maintenance and Outages
  • Contact Us

Getting Started with Windows

To access SCIAMA, you will need an SSH key pair, before applying for an account. SSH keys are an authentication method that provides an encrypted connection to the server. Windows users can generate SSH key pairs and login with the PuTTY software package.

Using PuTTygen to generate ssh key pairs

On opening the PuTTygen package, you will see a window like this:


  • Change the Number of bits from 2048 to 4096.
  • Set 'Type of key to generate' to 'RSA'.
  • Press 'Generate' and move your cursor around in the box to generate randomness: this produces a unique key.


While SSH key generation does not require you to set a passphrase, for important security reasons SCIAMA does require its users to only use keys protected with a reasonably strong passphrase. Users who are not obeying this may be held responsible for any damage caused as a result.
  • Enter a strong passphrase.
  • Save the public key. Make sure that it is a text file which contains exactly what is shown in the window above (i.e. remove any prefixes/suffixes like ‘---- BEGIN SSH2 PUBLIC KEY ---- Comment:‘ or ‘---- END SSH2 PUBLIC KEY ----‘.
    Save your public key as C:\Users\your_username\.ssh\id_rsa.pub
    You will need to provide sciama-support with this key when you apply for an account.
  • Save the private key:
    • click on "Conversions" in the menu
    • select "Export OpenSSH key (force new file format)"
    • save it as C:Users\your_username\.ssh\id_rsa

Logging in from Windows

If you prefer to use the Linux command line on Sciama, you can connect using the Windows command line or PuTTy. If you prefer to use a Graphical User Interface (GUI), you should install X2Go.

Windows Command Line Login

ssh <username>@<URL of login server>

The hostname can be any of the login nodes, 1-8.
e.g:     ssh smithj@login3.sciama.icg.port.ac.uk

Using PuTTy to Login

Open PuTTy and select the options shown below. The hostname can be any of the login nodes, 1-8.


Make sure Putty is using the correct Private key file in your .ssh folder.


Using a Graphical User Interface

X2Go is supported on nodes login3, login4, login5 and login6. Instructions can be found here.

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